LightStone Monitor
A Windows .NET application for monitoring bio-feedback data using The Wild Divine Project's Light Stone biofeedback device. Supports data logging, multiple graphs, and automatic gain control for weak signals.
http://sourceforge.net/projects/lsm |
Open Babel
Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, biochemistry, or related areas.
http://sourceforge.net/projects/openbabel |
General Hidden Markov Model Library
The General Hidden Markov Model Library (GHMM) is a C library with additional Python bindings implementing a wide range of types of Hidden Markov Models and algorithms: discrete, continous emissions, basic training, HMM clustering, HMM mixtures.
http://sourceforge.net/projects/ghmm |
Scientific Icons Project
ScientificIcons is a central repository of icons for scientific programs, including molecular biology, lab automation, sample tracking, chemistry, biology, physiology, etc. Looking for an icon for a flask, chemical, gene, plate, robot, atom?
http://sourceforge.net/projects/scientificicons |
TASSEL
TASSEL is a bioinformatics software package that can analyze diversity for sequences, SNPs, or SSRs. Genotype/phenotype associations can be carried out by GLM or a mixed model. Estimates distance and linkage disequilibrium statistics.
http://sourceforge.net/projects/tassel |
HalX
HalX is a LIMS (Laboratory Information Management System). It is meant to be able to keep track of all the experimental details of any type of biochemical, molecular biology or structural biology experiment (but not all are available now...)
http://sourceforge.net/projects/halx |
RFLP planner
Find restriction enzymes that help differ known homologe DNA sequences (RFLP). Simulate electrophoresis gels. Usefull to investigate the diversity of a population by one of their common genes. Written in perl, uses bioperl modules and the GD library.
http://sourceforge.net/projects/restrifind |
Sequence Alignment Program
Bioinformatics program for analysing two (currently) or more (in the future) protein sequences and compare them using a Smith-Waterman and/or Needleman-Wunsch algorithms. Also set on gathering inherent statistical analysis from the process and displaying
http://sourceforge.net/projects/seqap |
Manuelito
Manuelito is a Java tool for decrypting posttranslational modification (PTM) patterns of proteins based on MALDI mass spectrometry spectra. It was built for analysing the 'histone code' but it can be applied to any other highly modified protein.
http://sourceforge.net/projects/manuelito |
Trace Utilities
trace_utils is a program for processing sequencing trace data. The main goal of this program is to provide a completely free software in detecting SNPs like what polyphred has done, but with even higher accuracy and more flexibility.
http://sourceforge.net/projects/trace-utils |
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Bio-Informatics